FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74999678
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1390600.18541412937799548No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG1318830.17584475496014795No Hit
CTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1217260.16230203015004946No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT1010700.13476057857208398No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC901400.12018718267030426No Hit
CCCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGTACATCATGGGGCA867830.11571116345326175No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC800810.10677512508787038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)