FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008407990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008407990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53452879
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2140020.4003563587285916No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC860940.16106522531742398No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG687850.12868343349663167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)