FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180639982
Total Bases13.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC4944450.273718472801885No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCT2409760.1334012533282914No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2131440.11799381158042851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)