FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62553524
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length76-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2196470.3511344940374582No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1550190.24781817248217702No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG846520.13532730785878666No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC631630.10097432720177363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)