FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187051843
Total Bases14.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC6817060.36444762535699793No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG3216260.17194484418953307No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3179620.16998602895348108No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1890690.10107839461383976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)