FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130311790
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA78058255.990114171557308No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA11076110.8499699067904755No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC7180630.5510345610324285No Hit
CCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACA6130870.47047699981713087No Hit
GCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACA5816580.44635869095190855No Hit
CCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACAC4945160.3794867678511668No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC3726720.2859848675242662No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG2937200.22539787075290732No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2813470.21590295091487885No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA2600640.19957058375147788No Hit
CTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTCTCT2446730.18775968007192595No Hit
GTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACAAGC2028310.15565053630220257No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2005860.15392774514109583No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1974790.15154346356534584No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1882300.1444458709376949No Hit
GGCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACAC1788860.13727537623418418No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTT1783580.1368701941704584No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1641720.125983995768917No Hit
CCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGC1414480.10854581922326446No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC1376050.10559673840716945No Hit
CGCCTCTTGGGTTCGGGTGATGATGGTTCCACGTCAGCGGCCCTCCGCCT1370400.10516316290337198No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)