FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50176938
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2001910.39897014042586654No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1058190.21089170487047257No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC652010.12994216586113724No Hit
GCCGGCTTCACGCTCAGGAGAAAAACGCTACCTCTCTTCCTCGTGGTTTT618420.12324785541915691No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG616350.1228353152996303No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA609840.12153790651793062No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC540150.10764905582720094No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG512380.10211464079374472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)