FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175987115
Total Bases13.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15210060.8642712280384846No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC8143590.46273785441621684No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC4161680.23647640340032847No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG2896050.16456034295465324No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT2415450.1372515254881018No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG2084970.11847287797177651No Hit
GGCCTTTTTAACCATCTCATACAAACCAACTACTTATAGTACAGCTAAGT2000020.11364582003631346No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG1950580.11083652345798156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)