FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70478154
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4530250.6427878346529905No Hit
CTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTG1202520.17062308414037064No Hit
CTCGGAGATGTTGGTGTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCC877080.12444707334417415No Hit
CTCGGAGGCACAGTAATAAACAGCCGTGTCCGCGGCGGTCACAGAGCTCA819900.11633392100479815No Hit
CCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAG808470.11471214186455564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)