FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189215759
Total Bases14.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG3491780.18453959746555781No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2633200.13916388433587076No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2399310.12680286318012235No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG2235350.11813762298731154No Hit
CTCCTGTTCAATCGTTTCTTTGCAAGGCAGTGGATTTTTCTCTTGCGTCT2162450.11428487835413328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)