FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209637946
Total Bases15.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCT3605710.1719970105030508No Hit
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCC2644310.1261369923935431No Hit
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGG2605200.12427139502692895No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2287960.10913863847912342No Hit
ATCGATTACTATGCAGGAGGCTCTGACTAGACCTGCAGGAGATGGAGGCC2268650.10821752661133209No Hit
CTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGT2264800.10803387665322765No Hit
GTGGTCTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGC2135960.10188804273058465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)