FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152580903
Total Bases11.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA5556340.36415697448061374No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC5266020.34512969162333507No Hit
GTCCTGACTCGCCTGGCAAGTGATGGTGACTCTGTCTCCTACAGATGCAG3089000.20244997501423884No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG2290700.15013019027682645No Hit
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC2274800.14908812015616396No Hit
GGCGGACTTTGGAGTGGGAAGCGGGGAATGTCTACGTGCGTATGCACGTG2107450.13812016828868812No Hit
CTCGCACAAAAATATACAGCCGTGTCCGCGGCGGTCACAGAGTTCAGCTT2088780.13689655513442597No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1781640.11676690627528924No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1702420.11157490659234072No Hit
GTCTCGCACAAAAATATACAGCCGTGTCCGCGGCGGTCACAGAGTTCAGC1701830.111536238581574No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG1630550.10686461856894372No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1583530.10378297472783997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)