FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182092177
Total Bases13.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA4970590.27297108980140317No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG3213740.17648973464686513No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC2389330.13121541185154814No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1867900.10257991478678406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)