FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56199880
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length76-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC856780.15245228281626225No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG658640.11719597977789277No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC588560.10472620226235359No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)