FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64608020
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length76-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1715440.26551502429574536No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1476260.2284948524966405No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC903120.1397845035337718No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG898660.13909418675885749No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)