FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103017338
Total Bases7.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA34527933.351662027997656No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3115400.3024151138520003No Hit
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1219920.11841890148627215No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)