FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008408856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008408856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences218833234
Total Bases16.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC5074230.23187657136209944No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG3628900.16582947359814643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)