FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54184172
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG715540.1320570147311654No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA707660.13060271549411145No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA678380.1251989234051597No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG565950.10444932147343693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)