FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118293319
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA2468140.20864576468600055No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1684060.14236306954917716No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1554020.13137005649490652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)