FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58639373
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1025730.17492172025782063No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC696620.11879731387987386No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA592840.10109930745678335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)