FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202174088
Total Bases15.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGC2328680.11518192182966593No Hit
CTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTTTGTGGG2224990.11005317357979129No Hit
GTGAGGGATGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCA2120920.10490562964725726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)