FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171911133
Total Bases13 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC8616110.5011955799279154No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG2195440.12770784309821284No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1935420.11258258649252229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)