FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57989324
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1016770.1753374465962045No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG923420.1592396559063182No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC859360.14819279493584026No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA836640.14427483238121555No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA682380.11767338415602155No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA599180.10332591564612824No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTTCTCCTGAGCGTGAAGCC586500.10113930626264932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)