FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59115236
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA1267790.2144607863867785No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1250930.21160872976976694No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA855650.14474271911897638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)