FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67836504
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3164510.4664907259961392No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC844130.12443595265463563No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG688650.10151613945199771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)