FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55228958
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG1251810.22665826865681588No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1015510.18387274299109538No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA901930.16330744461990393No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)