FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197166406
Total Bases14.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG3003560.1523362960726687No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2533580.12849957816850402No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG1986040.10072912725304736No Hit
CTCGGTTTTATTCTTATTGCTCAGGCTTGAGTGCACTGGCCTCTTCTCAG1982010.10052473137842763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)