FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences211571668
Total Bases16 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC4729630.2235474175114978No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG4725000.22332857913659782No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG2170620.10259502231650412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)