FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136214660
Total Bases10.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC4346890.3191205704290566No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG2650630.19459212393144762No Hit
CTCCTGTTCAATCGTTTCTTTGGAAGGCAGTGGATTTTTCTCTTGCGTCT2344730.1721349229223932No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2208520.16213526502947626No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2109700.1548805392899707No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC1740480.12777479310964032No Hit
GCCAGATTTTCTCCATGTCGTCCCAGTTGGTGACGATGCCGTGCTCGATG1614270.11850927058805565No Hit
CCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACA1417450.10406001820949375No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1367230.10037319037466307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)