FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75218488
Total Bases5.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1332390.17713597220938557No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1022380.13592137082042913No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC949650.12625220544183233No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC758770.10087546561691058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)