FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61172167
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3557320.5815259086701964No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1434800.23455111537899254No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1024050.16740456488978067No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC1017690.16636487636607675No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAACACGGAGAGAAGAACGA773730.126483993937962No Hit
CCACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAA674710.11029689368369114No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC651140.10644383417053054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)