FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169336754
Total Bases12.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC6715200.39655891833145684No Hit
GCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACT4117970.24318229225062388No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2917600.17229573208897106No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG2583200.15254809951063547No Hit
CTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTG2436100.1438612671174741No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2387960.14101841115957614No Hit
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC2264030.13369985821270672No Hit
GGGGGCTTTGCCTGGGTGTTGTTGGTACCAGGAGACAAAGTTATAACCAC2067750.12210875377946598No Hit
GCCAGACTTGGAGCCAGAGAAGCGATCAGGGACCCCTGAGGGCCGATTAG1911720.11289456983449676No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA1906360.11257804079556173No Hit
GTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCA1783850.10534334442244005No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1704080.10063261281127428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)