FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55434696
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1647890.29726689580835797No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA825580.14892838954145252No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC562040.10138776624661204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)