FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103017338
Total Bases7.8 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA69424296.739087938770074No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3486360.33842458635458045No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT1074970.10434845443201028No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)