FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58866450
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3110220.5283518880448881No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC909590.1545175562650712No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA813260.13815339637433546No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG753970.1280814453733833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)