FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008409872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008409872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59875831
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length76-101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2702380.4513306880033114No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2599550.43415681362317965No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1461490.2440868002316327No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC1125740.18801242190692938No Hit
GAAAAAAATTCCAAAAGAGAACCACACACTACCATATCCAAACAACTTTT1024050.17102894154404302No Hit
CTCAGGACAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1001640.16728619599450736No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT896910.14979499825229983No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC864660.14440885171180337No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG847110.14147778591999835No Hit
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT834730.13941017369763103No Hit
CTTCATTTTAATCTAAAAGCATTGCCCTTCTATTGGTATTAATTCGGGGC764390.12766252880899473No Hit
CAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGT758720.12671556909164233No Hit
CTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTCTCT719370.12014363525075751No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA698960.11673491429288055No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC675670.11284519792301505No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG671280.11211201394432421No Hit
CTCATTTTGTCCACTGGTGAATTCAACTGGAAGCTCCTTCTATAGTCTGA611910.10219649394093587No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA606780.10133972086333132No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)