FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161543636
Total Bases12.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC3318690.20543613367721894No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3151430.19508227485977844No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2748460.17013731200156965No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTC1784060.11043827192301156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)