FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123535510
Total Bases9.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA5058600.4094854993515629No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4159000.336664332385077No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC3778970.30590151770936147No Hit
GGCGGACTTTGGAGTGGGAAGCGGGGAATGTCTACGTGCGTATGCACGTG2024760.16390105160856178No Hit
CCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGG1942360.1572309047010046No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG1724150.13956715765369812No Hit
CCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGC1722500.13943359281877737No Hit
CTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCA1716470.13894547405843066No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC1701770.137755532801864No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTT1679290.13593581311154987No Hit
CCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGC1543580.12495030781028063No Hit
CCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGCC1539280.1246022297556387No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1490600.1206616623835527No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACTTCTCTTCCTCGTGGTTTTC1432560.11596341812973453No Hit
GGGAGAAGAACGATCATCAATGGCTGACGGCAGTTACAGCCAAGCAACGC1240100.10038409199103965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)