FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51597308
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGG3244760.6288622654499727No Hit
GTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCAAA2753910.5337313334253795No Hit
GTCGTATCCGAGGATGCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGA2741010.5312312029922182No Hit
GGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGGG2657790.5151024545699167No Hit
CTCCGTTCATGGTGATGCTGTCCACGGTGATCTGCCAGTAACCCTCGACG2546390.4935121809068023No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGC2503990.48529469793269064No Hit
GGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGA2053590.3980033221888243No Hit
CGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAA2044720.396284240255325No Hit
CGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCAGACTT2021290.3917433056778854No Hit
CTCGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGT2007390.38904936668401385No Hit
GCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGG1907300.36965106784253166No Hit
CGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAATCC1775980.34420012765007046No Hit
CTCGACGGTAACAGGCACCCAGTTCAGACTTCCAGTGTAGTAAGAAGAGT1748950.3389614822540742No Hit
CCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGA1737080.3366609746384443No Hit
CGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGGGAG1595690.3092583822396316No Hit
GCCCTGTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGAT1529670.2964631410615453No Hit
CGGTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCA1472760.28543349587152883No Hit
CTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGGAC1460710.2830981027149711No Hit
CTCCAACCTGGACAGTGTCGTATCCGAGGATGCCTGTCATGCTGCCGGTG1352660.2621570877302358No Hit
CGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCAAAGC1302620.2524589073522983No Hit
GTCAGAGATGCCTCCAACCTGGACAGTGTCGTATCCGAGGATGCCTGTCA1296310.25123597533421704No Hit
GTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGA1288020.24962930236592965No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1270250.2461853242421097No Hit
CTGTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCA1246410.24156492815477892No Hit
CCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAATC1233760.2391132498617951No Hit
ATCGAAGGGAGCATAATACAGGAAGGAGCCAGGTTCCGTCTCGCTCAGGC1186890.23002944262130884No Hit
GGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGAGCCGG1113470.21580001809396723No Hit
GTGCTTCTTCAGGAAGTCCTTCAGCAGGCCACGCTCGGACAGGGTGCGCC1112650.21564109507418486No Hit
GGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGTGC1099900.21317003592513004No Hit
CCGGTGTCAAAGACGACGGTGAAATCCTGGGCAGGAGTTCCGATGCCGAT1098370.21287350882724346No Hit
GTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGT1058540.20515411385415688No Hit
CTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGCAGAGAGGTGCCGG991080.19207978834864797No Hit
CTCAGGGTTGAAGCGGTTGTGGTTGGTGCAGGCAAGACTGGAGCAGTAGA981720.19026574022040066No Hit
CAGGGTTGAAGCGGTTGTGGTTGGTGCAGGCAAGACTGGAGCAGTAGACT954430.18497670459861976No Hit
GCCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAAT931750.1805811264417128No Hit
GCTGGGTTGAGGTTGTGCTTCTTCAGGAAGTCCTTCAGCAGGCCACGCTC904800.1753579857305734No Hit
TGCTTCTTCAGGAAGTCCTTCAGCAGGCCACGCTCGGACAGGGTGCGCCT883150.17116203039119793No Hit
GCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGAGCCGGT880460.17064068536288754No Hit
CTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAGGATGTAGGCACTGG872260.16905145516506404No Hit
GTTGTGGTTGGTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACA866910.16801457936526457No Hit
CGAAGATCTGATTGGTGTCAGAGATGCCTCCAACCTGGACAGTGTCGTAT828660.16060140191810007No Hit
GTCTCGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTT799010.15485497809304313No Hit
CTCGCTGGCTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGC795280.15413207216159416No Hit
CTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGTGCAGG794960.15407005342216692No Hit
CTGGGTGGCACGGGGTACTGGACTCCATTGATGGTGAAGACGATGTCGGG794640.15400803468273966No Hit
GGTTGGTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTG786880.15250408025162865No Hit
GCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGGGA785180.1521746056984213No Hit
CATCGAAGGGAGCATAATACAGGAAGGAGCCAGGTTCCGTCTCGCTCAGG780580.1512830863191545No Hit
GTTGGTGCAGGCAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGG761690.14762204260733913No Hit
GTTGAGGTTGTGCTTCTTCAGGAAGTCCTTCAGCAGGCCACGCTCGGACA761540.1475929713232326No Hit
TGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTG761010.1474902527860562No Hit
GTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTG760660.14742241978980763No Hit
CCGGTGTCAAAGAGGACAGTGAAATCCTGGGCAGGAGTTCCGATGCCGAT751890.14572271871237935No Hit
GTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGTGCAGGCAAGACT727790.14105193239926395No Hit
CTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTT719510.1394471975165836No Hit
CTGGTTGTTTGCCCTGTCGAAGACGGTAAAGTACTGGCGGATGAAGACAT717270.13901306634059282No Hit
TGAAGACATCACCCAGGATCCAAAGCTCTCCAGATTCGGTGGGGAGGTTC708870.13738507443062728No Hit
GCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGG707210.13706335221984836No Hit
GCTGGTTGGGCCGGTCAGCAGAGAGGTGCCGGTGTCAACAATGGCCTGGC699250.1355206360765953No Hit
GGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGTGCAGGCA690260.13377829711581077No Hit
CAGATGTTGTCAAAGACGGGTGTGGCCCCGGAGGAGGAAATGCTGGGGTA688970.13352828407249465No Hit
GGGCTGTTCATCTACCAGGGTGGGAGCCTCCCACTGGGGGAAGTACTTTC680450.13187703513524388No Hit
GGGGGAAGTACTTTCTGGCTGGGTTGAGGTTGTGCTTCTTCAGGAAGTCC671890.1302180338555647No Hit
GCACGGGGTACTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTG644370.12488442226482048No Hit
CCGAGGATGCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTC643150.12464797582075406No Hit
CGAGGATGCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCG640480.12413050696365786No Hit
GGGAGGTTCATGCCCTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAG632920.1226653142446889No Hit
CTCGGACAGGGTGCGCCTCAAGGACTTCTTTCTGATGAGGGGGACCTTGT631100.12231258266419634No Hit
GAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGTGCAGGCAAGACTGGA622370.12062063392919646No Hit
GTTTGCCCTGTCGAAGACGGTAAAGTACTGGCGGATGAAGACATCACCCA617170.11961282941350351No Hit
CGCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTG615530.1192949833739388No Hit
CCTCGCTCTGCAGGATGTAGGCACTGGGTGGCACGGGGTACTGGACTCCA608800.11799065176035929No Hit
CACGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCAGAC599980.11628126025489548No Hit
GCCGATAGTGCCGAAGTACTCCATATCCAGGTAGTTCTCCAGGGGCTGTT594830.11528314616723802No Hit
CCTGGTTCCAGATGTTGTCAAAGACGGGTGTGGCCCCGGAGGAGGAAATG588630.1140815330908349No Hit
GGAAGAATCCTCAGGGTTGAAGCGGTTGTGGTTGGTGCAGGCAAGACTGG583750.1131357473145692No Hit
CCAGGATCCAAAGCTCTCCAGATTCGGTGGGGAGGTTCATGCCCTGGAAG578410.11210080960037683No Hit
TCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGCAGAGAGGTGCCG576830.11179459207445475No Hit
GTAAAGTACTGGCGGATGAAGACATCACCCAGGATCCAAAGCTCTCCAGA568300.11014140505159688No Hit
TGCCTGTCATGCTGCCGGTGCCGTAGGTGATGGAGACTGTCTCGCTGGTG564600.10942431337696922No Hit
TCTCGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTG561380.10880024981148241No Hit
GTAGGTGATGGAGACTGTCTCGCTGGTGGACTGGTAGGTGGAAGAATCCT544720.10557139919005076No Hit
TGTTCATCTACCAGGGTGGGAGCCTCCCACTGGGGGAAGTACTTTCTGGC539020.10446669039400273No Hit
CAGAGATGCCTCCAACCTGGACAGTGTCGTATCCGAGGATGCCTGTCATG535870.10385619342776564No Hit
CCAGATTCGGTGGGGAGGTTCATGCCCTGGAAGCCACTGATGCAGCTCCC532030.10311196855463856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)