FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70478154
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG1078740.15306019507832172No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG854160.12119500178736237No Hit
CTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTT843800.11972504274161325No Hit
CATGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCC729600.1035214401330659No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTG707800.10042828306768647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)