FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173449309
Total Bases13.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC4429790.25539392607208367No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2381530.13730409269027413No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG1958100.1128917728925631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)