FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences203616281
Total Bases15.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC3620220.17779619499091037No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2189170.10751448701688054No Hit
CTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCC2041010.10023805512880378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)