FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58445002
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length76-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA802950.1373855714813732No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA708690.1212575884589755No Hit
TCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTC591000.10112070831993471No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)