FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171267945
Total Bases13 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2666710.1557039760125574No Hit
GTGGGTTTTCACAGCTTCGCCATTCTGGCGGGTCCAGGAGATGGTCACGC2427050.14171069781913948No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC2322100.135582872790352No Hit
CACCGTTATATTTTTGACAGTAATAAGTTGCAACATCTTCAGGCTGCAGG1852090.10813990907638904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)