FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61930615
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1134840.18324378015622805No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1074320.17347155360882496No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA1047680.16916996545246643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)