FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145513306
Total Bases11 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC3622230.24892775097831946No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2172770.14931761635599153No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1869520.12847759778064557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)