FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59962277
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8156851.3603302623080842No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC4728090.7885107498502767No Hit
GGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAA1734560.28927520547626967No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC1478090.246503314075281No Hit
CTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTTCTCCCACGTCAAGAGA1342410.2238757544180652No Hit
CTCCCGAGTGTGTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTC1191270.1986699070817474No Hit
CCCGAGTGTGTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTCAA1015940.16942985670807664No Hit
TTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTT947880.15807938714535474No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG879370.14665387039921782No Hit
CCTCAGTCCTAGCTTCATCAAACACTGGTTCCTGGAATCCTGTCTGCTGC827110.1379383908319559No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT823990.1374180636936119No Hit
CTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCAAGACA813520.13567196589282293No Hit
CTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTCTCT800470.13349559757378793No Hit
GCTCAGTCTTACAGGCATCATCATCTTTCTCAAAGTCACCGGAAGTGTTA788570.13151101650125796No Hit
GGAAGGGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGG787350.13130755524844395No Hit
CTCCCACGGAAACCCTGTCCTGCTTCTCACACTGACATCTGCTCTCTAAT786170.13111076485637793No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA780910.13023354666801595No Hit
CGGTGCTCTACACGTTCAGAGAAACTTGCTACCTCTCTTCCTCGTGGTTT779680.13002841770001497No Hit
CCTGAGATGACTGAATATGAACCAAAGCTGCACTGTGCTGTACTTTTCAG758780.126542892959185No Hit
CCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGC757440.12631941912412697No Hit
CCTCTCCCAAGATGTGACCTCTCCCTCTCTGTGTTCCTTTCTCTCCATCA724890.12089100619044203No Hit
AGGTTCCACGTCGCTTGAGTGCACTGGCCTCTTCTCAGCTCAACCTCCGC722090.12042404593808204No Hit
GGGAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAG721800.12037568219765904No Hit
CTCCGCCTCTTGGGTTCGGGTAATGATGGTTCCACGTCAGCGGCCCTCCG718090.11975695986328205No Hit
CCCTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTC712900.11889141568122905No Hit
CTGAGATGACTGAATATGAACCAAAGCTGCACTGTGCTGTACTTTTCAGC708170.11810258639777807No Hit
GCCTCTTCTCAGCTCAACCTCCGCCTCTTGGGTTCGGGTAATGATGGTTC689530.11499396528921009No Hit
GTCCTTTTAGTAGCTTTTTGATGTGATTTTTAACCAACTTCCCCTTCTAG686330.11446029642937008No Hit
CGCCTCTTGGGTTCGGGTGATGATGGTTCCACGTCAGCGGCCCTCCGCCT685100.1142551674613691No Hit
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT684800.11420513600575907No Hit
GAAGAAAAGAAGGGGAAGAAGATCAAAGAAGGAAAGAAGAAGGGGAAGAA677590.1130027133559321No Hit
CCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTC670670.11184865444652811No Hit
CTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTG641510.10698559696123615No Hit
CCCTGAGCCTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCC632050.10540793839433416No Hit
CTCCGCCTCTTGGGTTTGCGTGACGGTTCCACATCACCGACCCTCCGCCT630060.10507606307212115No Hit
CTCCGCCTCTTGGGTTTGCGTGACGGTTCCACGTCACCGACCCTCCGCCT608920.10155051316680318No Hit
CCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTAACACTCGGGGGGG608680.1015104880023152No Hit
CGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGT607750.10135539048992419No Hit
CTTCTTTTCTTCCCCTTCTTCTTTCCTTCTTTGATCTTCTTCCCCTTCTT604950.10088843023756419No Hit
CCTCCTTTGGCCCTACAGGTCAGAATGGCGGCAGCGGAGCATCGTCATTC604580.10082672477564521No Hit
CCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACAC604000.1007299972947992No Hit
CCGCCTCTTGGGTTCGGGTGATGATGGTTCCACGTCAGCGGCCCTCCGCC602490.1004781723015622No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)