FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175406457
Total Bases13.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC4598520.26216366709921063No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3638780.20744846354202343No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2530880.14428659259675944No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG2197990.12530838588228255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)