FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59037645
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA6442771.0912986112504997No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG609060.10316468416042002No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC606080.102659921478914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)