FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008410676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008410676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176136193
Total Bases13.3 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGTTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC12169640.6909221661217578No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC7826850.44436352726211126No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA6859660.38945204180721676No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG3786200.2149586598593056No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC2878480.16342353896566847No Hit
CCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAGC2192940.124502520614829No Hit
CCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACACA2129680.12091098165156776No Hit
GCCCCGTCCCTGCTGACACCAACCATTCTTACCGGTAGCCTGCCAACACA1949570.11068537174526079No Hit
CCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1905200.10816629833710553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)